Chapter 4: Data Analysis | Flow Cytometry - A Basic Introduction
Learn how to use regions and gates to analyse multiparameter flow cytometry data. See examples of light scatter, fluorescence and cell cycle plots from human and animal cells.
Learn how to analyze flow cytometry data with FCS files, visualization, gating, controls, and statistics. This guide covers basic concepts, methods, and examples for flow cytometry research.
Data analysis in flow cytometry - Abcam
Here we cover signal measurement, visualizing multi-color flow cytometry data and gating strategies to quantify your data.
Data-Driven Flow Cytometry Analysis - PMC - PubMed Central …
The emergence of flow and mass cytometry technologies capable of generating 40-dimensional data has spurred research into automated methodologies that address bottlenecks across the entire analysis process from quality checking, data transformation, ...
Data Analysis in Flow Cytometry: The Future Just Started
Key terms: polychromatic flow cytometry, data analysis, lymphocytes, T cells, immune system. Introduction. Differently to any other tissue in the body, cells being part of the immune system display a huge diversity and hundreds of subsets can been identified even within the same lineage, such as in CD4+ and CD8+ T cells or in dendritic cells.
Learn the principles, techniques and applications of flow cytometry, a powerful tool for analyzing cellular characteristics and functions. This guide covers fluidics, optics, detection, fluorescence, fluorophores, data analysis, controls, sample preparation and multicolor panels.
CytoTree: an R/Bioconductor package for analysis and visualization …
2021年3月22日 — CytoTree represents a versatile tool for analyzing multidimensional flow and mass cytometry data and to producing heuristic results for trajectory construction and pseudotime estimation in an integrated workflow.
CRUSTY: a versatile web platform for the rapid analysis and ...
2023年9月4日 — CRUSTY is an interactive webtool for flow cytometry data analysis, offering popular algorithms and visualizations, and generating publication-quality figures in minutes.
Spectral Flow Cytometry Data Analysis - Thermo Fisher Scientific
Learn more about spectral flow cytometry data analysis including data generation, visualization, and data mining.
Computational flow cytometry: helping to make sense of high …
2016年6月20日 — We cover two of the most widespread types of computational flow cytometry analysis: visualization of high-dimensional cytometry data and the automated identification of cell populations.
Flow cytometry data analysis: Recent tools and algorithms
Flow cytometry (FCM) allows scientists to rapidly quantify up to 50 parameters for millions of cells per sample.
Learn how to use logicle displays to visualize and analyze FACS data more accurately and avoid misinterpretations. Compare logicle and logarithmic plots of the same data set and see the differences in subsets and median values.
A review of the main steps and software tools for FCM data analysis, focusing on the use of R-based packages. The review covers data pre-processing, compensation, quality assessment, normalization, transformation, gating, cross-sample comparison, interpretation and visualization.
Interpreting flow cytometry data: a guide for the perplexed
2006年7月1日 — Recent advances in flow cytometry technologies are changing how researchers collect, look at and present their data. Recent advances in fluorescence-activated cell sorting (FACS) technology...
A Guide on Analyzing Flow Cytometry Data Using Clustering
2023年1月31日 — Recent developments have moved the analysis of high-parameter flow cytometry data sets from the traditional analysis method of manual gating to using unbiased analyses to improve scientific rigor. This chapter gives a step-by-step guide on using modern computational approaches to analyze complex flow cytometry data sets in FlowJo™ Software …
High-dimensional data analysis for cytometry | Crick
Hierarchical gating is the traditional method for the analysis of flow cytometry data, and its outcome relies heavily on the operator judgement and experience. Furthermore, as the number of parameters available increases, the complexity of the levels of gating can become unmanageable. With such a targeted approach, there is a risk that ...
Imaging flow cytometry | Nature Reviews Methods Primers
2022年11月3日 — Imaging flow cytometry combines the high-event-rate sampling of traditional flow cytometry with the acquisition of an image of each cell 3, thereby providing spatial information as well as...
Flow Cytometry Guide - MilliporeSigma
Some benefits of flow cytometry include quick analysis, calling attention to differences in cell subpopulations when looking at heterogeneous cell populations, and analyzing subpopulations of heterogeneous cell populations. ... Data Acquisition: Most flow cytometers are accompanied by the necessary software to obtain and transform the signals ...
Introduction (Chapter 1) - Flow Cytometry Data Analysis
Flow cytometry is now a well established technique in cell biology and is gaining increasing use in clinical medicine. The major applications to date in the latter have been in DNA histogram analysis to determine “ploidy” (DNA index, Hidderman et al. 1984) and S-phase fractions for prognostic purposes in cancer patients and in ...
Data-Driven Flow Cytometry Analysis | SpringerLink
2019年5月11日 — The emergence of flow and mass cytometry technologies capable of generating 40-dimensional data has spurred research into automated methodologies that address bottlenecks across the entire analysis process from quality …
Flow cytometry basics | Miltenyi Biotec | USA
Flow cytometry is the measurement of chemical and physical properties of cells as they “flow” one by one through an integration point, most commonly a laser. As cells scatter laser light in different directions (forward or to the side), intrinsic cellular properties, such as relative cell size and cytoplasmic complexity, can be measured. In human whole blood, for example, lymphocytes ...
Critical assessment of automated flow cytometry data analysis
2013年2月10日 — Flow cytometers provide high-dimensional quantitative measurement of light scatter and fluorescence emission properties of hundreds of thousands of individual cells in each analyzed sample.
Intracellular Cytokine Staining with Flow Cytometry
2024年3月21日 — Learn how to use flow cytometry to detect and characterize cytokine-producing cells in various experimental conditions. Find tips and best practices for cell activation, fixation, permeabilization, and antibody staining.
Analyzing high-dimensional cytometry data using FlowSOM
2021年6月25日 — We will demonstrate how FlowSOM can be used for the analysis of cytometry data by providing a detailed discussion of the application, parameter settings and interpretation of the results.