Phylogenomics of 10,575 genomes reveals evolutionary ... - Nature
2019年12月2日 · Here we build a reference phylogeny of 10,575 evenly-sampled bacterial and archaeal genomes, based on a comprehensive set of 381 markers, using multiple strategies. …
A rooted phylogeny resolves early bacterial evolution - Science
2021年5月7日 · A rooted bacterial tree is necessary to understand early evolution, but the position of the root is contested. Here, we model the evolution of 11,272 gene families to identify the …
A standardized bacterial taxonomy based on genome phylogeny ...
2018年8月27日 · Here we present a phylogeny inferred from the concatenation of 120 ubiquitous single-copy proteins, and we used this phylogeny to propose a bacterial taxonomy that covers …
A new view of the tree of life | Nature Microbiology
2016年4月11日 · Here, we use new genomic data from over 1,000 uncultivated and little known organisms, together with published sequences, to infer a dramatically expanded version of the …
Bayesian inference of ancestral dates on bacterial ...
The tool of choice for such a study is often to build a phylogenetic tree, and more specifically when possible a dated phylogeny, in which the dates of all common ancestors are estimated. …
Phylogenetic trees of closely related bacterial species and ...
2023年4月20日 · In this study, we aimed to perform genome-wide comparisons of different bacterial species, namely Escherichia coli, Shigella, Yersinia, Klebsiella, and Neisseria spp., …
VBCG: 20 validated bacterial core genes for phylogenomic ...
2023年11月8日 · Using Escherichia coli strains as examples of prominent bacterial foodborne pathogens, we demonstrated that the 20 VBCG produced phylogenies with higher fidelity and …